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PHARMACOGENOMICS |
From The Miriam Hospital, Providence, Rhode Island (Dr Kwara); Warren Alpert Medical School of Brown University, Providence, Rhode Island (Dr Kwara); University of Ghana Medical School, Accra, Ghana (Dr Lartey, Mr Sagoe, Mr Boamah), Korle-Bu Teaching Hospital, Accra, Ghana (Dr Xexemeku, Dr Kenu, Dr Oliver-Commey, Dr Boima, Mr Sagoe); and Tufts University School of Medicine and Tufts Medical Center, Boston, Massachusetts (Dr Greenblatt and Dr Court).
Address for reprints: Awewura Kwara, MD, The Miriam Hospital, 164 Summit Avenue, Providence, RI 02906; e-mail: akwara{at}lifespan.org.
| ABSTRACT |
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Key Words: Cytochrome P450 2B6 genetic polymorphisms efavirenz exposure rifampin
Efavirenz is primarily metabolized by hepatic CYP2B6, with minor contributions from CYP3A4/5 and CYP2A6.14,15 In the setting of impaired CYP2B6 function, it is hypothesized that alternate metabolic pathways are critical for the clearance of efavirenz.16 The CYP2B6 gene is highly polymorphic17 and is subject to pronounced interindividual variability in expression and activity. The single nucleotide polymorphism (SNP) c.516G>T (Q172H), a marker for the CYP2B6*6*6 [Q172H and c.785A>G (K262R)] allele, is significantly associated with elevated efavirenz plasma concentrations18-22 and a higher likelihood of efavirenz-related central nervous system (CNS) symptoms.21,22 The low clearance of efavirenz in CYP2B6*6*6 haplotype has been associated with a reduced CYP2B6 protein expression in the liver.15
It is not known whether CYP induction by rifampin will affect the relationship between CYP2B6 c.516G>T genotype and efavirenz exposure. The reported magnitude of induction of CYP2B6 activity by rifampin in primary human hepatocytes varies. While some authors reported a 7- to 13-fold induction,10,11 others found only a 2.5-fold increase in activity.12 In one in vivo study, CYP2B6 activity in the presence of rifampin was only 2.1 times that in the absence of rifampin.23 Co-administration of rifampin with efavirenz 600 mg/d caused a 22% reduction in efavirenz area under the curve (AUC) in HIV/TB co-infected patients, which was overcome by increasing the dose to 800 mg/d.24 This finding led some experts to recommend an increased dose of efavirenz when co-administered with rifampin.6,7,25 Although an increased efavirenz dose might be appropriate for some persons, it does not take into consideration the variable effect of rifampin on CYP2B6 activity. In the aforementioned pharmacokinetic study, the change in efavirenz AUC with concomitant rifampin ranged from a decrease of 65% to an increase of 37%.24 Furthermore, variability in efavirenz concentrations is greater in the presence of rifampin than without rifampin.26,27
The CYP2B6 genotype most frequently associated with the slow-metabolizer phenotype (c.516TT) occurs with high frequency in native African populations,28,29 and dose reduction has been proposed in patients with this variant.29 Globally, efavirenz-based HAART is often needed in HIV/TB co-infected patients on rifampin. Consequently, understanding the potential modifying influence of enzyme induction and CYP2B6 genetic polymorphisms could enhance optimization of efavirenz dosage.
In this study, we determined whether the CYP2B6 c.516G>T genotype is predictive of efavirenz plasma concentrations in TB/HIV co-infected patients on rifampin. To our knowledge, this is the first study to evaluate whether variability in efavirenz exposure during co-administration with rifampin is related to CYP2B6 polymorphisms.
| METHODS |
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250 cells/mm3 receiving rifampin therapy were prospectively enrolled between November 2005 and February 2007. Patients aged 18 years or older were considered for inclusion if they were antiretroviral therapy naïve, had a new diagnosis of TB in the induction phase of therapy, and were available for follow-up at the study site for antiretroviral therapy. Patients were excluded if they were pregnant or breast-feeding, had any other opportunistic infections within 30 days of study entry, and had a hemoglobin count <6 g/dL, leukocyte count <2500/mm3, serum creatinine >1.5 mg/dL, and aspartate aminotransferase (AST) or alanine aminotransferase (ALT) >2 times upper limit of normal. All females with the potential for pregnancy were required to use 2 nonhormonal methods of contraception.
Tuberculosis diagnosis was based on a positive sputum smear for acid-fast bacilli (AFB) or a clinical presentation consistent with active disease. All patients received antituberculosis therapy consisting of isoniazid 5 mg/kg (maximum 300 mg) daily, rifampin 10 mg/kg (maximum 600 mg) daily, pyrazinamide 25 mg/kg (2 g daily), and ethambutol 15 mg/kg (maximum 2 g) daily for at least 2 months, followed by isoniazid and ethambutol daily for 6 to 10 months in accordance with Ghana National TB treatment guidelines in 2005. HAART was started between 2 and 10 weeks of starting TB therapy. The HAART regimen consisted of efavirenz 600 mg/d plus either lamivudine 150 mg and zidovudine 300 mg twice daily or lamivudine 150 mg and stavudine 40 mg twice daily for those with hemoglobin
8 g/dL. The Institutional Review Board for the protection of human subjects of the University of Ghana Medical School, Ghana, and Lifespan Hospitals, Providence, Rhode Island, reviewed and approved the study protocol.
Clinical and Laboratory Monitoring
Each participant was evaluated at study entry, and relevant clinical data were collected using standardized forms. Baseline measurements of complete blood count, blood urea nitrogen, serum creatinine, liver function, CD4 cell count, and HIV-1 plasma viral load were done prior to starting HAART. All study participants were reevaluated at week 2 of HAART and at 1 month. Drug-related side effects, clinical responses, and medication adherence were recorded at follow-up visits. Hemoglobin and liver function tests were repeated at 1 month of HAART, and toxicity was graded according to the Division of AIDS table for grading severity of adult adverse experiences.30
Pharmacokinetic Sampling
Pharmacokinetic sampling was performed on day 14 of concurrent HAART. The median duration of rifampin therapy before initiation of HAART was 35 days (range, 14-70 days). Patients were instructed to switch their evening efavirenz administration to mornings 3 days prior to admission to the hospital for sampling. Blood samples were obtained prior to medication dosage and at times 0.5, 1, 1.5, 2, 3, 4, 6, 8, 12, and 24 hours after observed administration of antituberculous and antiretroviral drugs. Seven milliliters to 10 mL of blood was collected in heparinized plastic tubes and then centrifuged at 3000 g for 10 minutes. Plasma was separated into labeled 1.2-mL cryovials and frozen at –70°C until shipping. The frozen plasma samples were shipped on dry ice for analysis and were received in good condition. Plasma samples were stored at –70°C until testing.
Analytical and Pharmacokinetic Analysis
Efavirenz concentrations were determined by a modified validated reverse-phase high-performance liquid chromatography with an ultraviolet absorbance detector.31 Ritonavir (Norvir, Abbott Laboratories, Abbott Park, IL) was used as the internal standard. The retention times of the internal standard and efavirenz were 9.9 and 16.9 minutes, respectively. Calibration curves were linear in the range of 0.05 to 12.5 µg/L (mean R2 = 0.992; SD = 0.003), and the limit of detection was 0.05 µg/L. Recovery of efavirenz ranged from 110% to 120%. Intraday variability (expressed as a coefficient of variation) ranged from 8.8% to 13.7%, whereas interday variability ranged from 10.8% to 14.3%.
CYP2B6 Genotyping
Exons 4, 5, and 7 of CYP2B6 gene were sequenced to determine the c.516G>T (Q172H, rs3745274), c.785G>A (K262R, rs2279343), and c.983T>C (I328T, rs28399499) c.SNP genotypes in each study participant. We chose these SNPs because they are relatively common in native Africans populations and have been associated with altered CYP2B6 function in vivo18-22 and in vitro.15 Because we used direct sequencing for genotyping, it was also possible to evaluate whether rarer cSNPs reported in African populations with established effects on CYP2B6 function were also present including c.1006C>T (R336C, rs34826503), c.503C>T (T168I, rs36056539), and c.593T>C (M198T, rs36079186). Genomic DNA was isolated from blood spots collected on Whatman FTA Classic Cards (Whatman International Ltd, Kent, UK) according to the manufacturer's protocol. Polymerase chain reaction was performed using 3 sets of primers designed to amplify target exons including exon–intron boundaries. The primers used were GGT CTG CCC ATC TAT AAA C (forward) and CTG ATT CTT CAC ATG TCT GCG (reverse) for exon 4; ACA GCA AGG GAG ATG AGG AGA GGT (forward) and TCT TTC TGC CTC TGT GAG TTT TTT CTC T (reverse) for exon 5; and AAT CCA CCC ACC TCA ACC TCC AAA AT (forward) and CCA AAC AGG AGG GCT ATG GGG (reverse) for exon 7. SNP genotypes were determined by direct inspection of sequence chromatograms (FinchTV, Geospiza, Inc, Seattle, Wash) and were used to infer the CYP2B6*1*1 (reference), CPY2B68*1*4 (K262R), CPY2B6*6*6 (Q172H, K262R), CPY2B6*1*9 (Q17H), CPY2B6*1*16 (K262R, I328T), and CPY2B6*1*18 (I328T) haplotypes for each subject (http://www.cypalleles.ki.se/cyp2b6.htm).
Pharmacokinetic Analysis
Peak plasma concentration (Cmax), time to Cmax (Tmax), concentration at 12 hours (C12h), and trough concentration at 24 hours (Cmin) were obtained by visual inspection of the plasma efavirenz concentration–time profile for each patient. Other pharmacokinetic parameters were determined by noncompartmental methods from plasma drug concentration–time data. The AUC from time zero to 24 hours (AUC0-24h) was determined using the trapezoidal method. Apparent oral clearance of efavirenz (CL/F) was calculated by dividing the administered efavirenz daily dose (600 mg) by the AUC0-24h. Clearance was normalized to body weight (CL/F/W) at study entry in kilograms.
Statistical Analysis
All statistical analyses were performed using Sigmastat 3.0 software (Systat, San Jose, Calif). Values of AUC0-24h, Cmax, Cmin, CL/F, and CL/F/W among CYP2B6 c.516GG, GT, and TT groups were compared using Kruskal-Wallis analysis of variance (ANOVA) on ranks. Individual groups were pairwise compared using the Student-Newman-Keuls procedure with adjustment for multiple comparisons. Correlations between efavirenz AUC0-24h and Cmin and between efavirenz AUC0-24h and C12h were evaluated by Spearman correlation analysis. Genotype frequencies were tested for consistency with expected Hardy-Weinberg equilibrium by chi-square test.
| RESULTS |
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Of the 30 enrolled patients, 26 completed both pharmacogenetic and pharmacokinetic testing. The demographic and baseline characteristics of the 26 patients who were included in the final analysis are summarized in Table I. The mean age was 39 years (range, 22-54 years), 18 patients (69.2%) were males, 16 patients (62.0%) had a history of alcohol ingestion, and the mean body weight was 55.7 kg. There were no differences in baseline characteristics between patients in the 3 major CYP2B6 c.516G>T genotypic groups (Table I).
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2 = 0.00004; P = .995). Additional genotype analysis of the exons 5 and 7 c.SNPs enabled unambiguous haplotype inference for 5 different alleles, including CYP2B6*1*1 (reference), CYP2B6*1*4 (K262R), CYP2B6*6*6 (Q172H, K262R), CYP2B6*1*9 (Q172H), and CYP2B6*1*18 (I328T) (Table II). The most common CYP2B6 haplotypes in the 30 patients studied were CYP2B6*1*6 (13 patients), CYP2B6*6*6 (7 patients), and CYP2B6*1*1 (5 patients). Rarer haplotypes included CYP2B6*1*18 (2 patients), CYP2B6*1*4 (1 patient), and CYP2B6*1*9 (1 patient). One patient was heterozygous for all 3 c.SNPs and so was either CYP2B6*1*16 or CYP2B6*6*18 (Table II). We did not find any of the rarer exon 4 or exon 5 c.SNPs in any of the subjects.
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| DISCUSSION |
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However, we also showed significantly lower efavirenz clearance in CYP2B6 c.516TT individuals, indicating that rifampin treatment does not fully reverse the poor metabolizer phenotype in this genotype group. Recent in vitro work indicates that the CYP2B6 c.516G>T polymorphism alters a splice enhancer site and results in aberrant messenger RNA (mRNA) splicing, with deletion of critical protein domains, and nonfunctional enzyme protein.32 Consequently, enhancement of CYP2B6 gene transcription via effects of rifampin on pregnane X receptor will lead to enhanced CYP2B6 mRNA, but much of this mRNA will likely be aberrantly spliced and will not produce active enzyme.
Efavirenz metabolism undergoes significant autoinduction following repeated dosing through constitutive androsterone receptor (CAR)–mediated enhancement of CYP2B6 gene expression.33,34 Other CAR-regulated CYPs such as CYP3A4 may also be induced with repeated efavirenz dosing. Consequently, it is possible that any additional effect of rifampin on efavirenz metabolism in our patients may be limited to those enzymes that are regulated mainly by pregnane X receptor and not by CAR. Furthermore, our patients may have been exposed to other potential enzyme inducers such as alcohol, which in previous work in our laboratory has been associated with enhanced CYP2B6 activity in vitro.35
A limitation of this study is that we did not include a comparator group of patients who had not received rifampin to determine whether there are differential effects of rifampin on each genotype. However, the average efavirenz oral clearance for patients in this study was 2.1 to 2.7 times higher than published values for subjects receiving a similar dose of efavirenz in the absence of rifampin.36,37 This is consistent with enhancement of efavirenz clearance by pregnane X receptor/constitutive androstane receptor–mediated induction of CYP2B6 protein expression,11,38-40 although it could also be the result of differences in the populations studied (sub-Saharan African in this study vs mostly Caucasians in the other studies).
We assayed for several c.SNPs other than c.516G>T (Q172H), including K262R and I328T, that have been associated with altered CYP2B6 activity. However, inclusion of these additional SNPs in the phenotype–genotype analysis (as haplotypes) did not improve prediction of the slow metabolizer phenotype over c.516G>T alone, either because of low frequency in the population (I328T) or linkage with c.516T as part of the CYP2B6*6 haplotype (K262R is in linkage with Q172H).
Although we measured complete efavirenz concentration profiles over 24 hours in order to accurately derive segmental AUC values, such intensive monitoring is not always practical, particularly for studies involving large patient populations. Consequently, we evaluated the correlation between AUC values and single plasma concentrations collected at defined time points relative to dose (Cmin and C12h). In both instances, excellent correlations were observed, validating the use of such measures as a surrogate for AUC in future (and previous) studies.
In conclusion, the results of this study demonstrate that CYP2B6 c.516TT genotype is highly predictive of reduced clearance of efavirenz in rifampin-treated TB/HIV co-infected patients. A priori dose reduction of efavirenz in patients with CYP2B6 516TT genotype or CYP2B6*6*6 haplotype with a goal of minimizing toxicity41 as well as reducing cost29 may be important, especially in resource-poor settings. Any controlled trials of reduced efavirenz dose in carriers of CYP2B6 516TT genotype should not exclude individuals requiring concurrent rifampin therapy, because co-administration does not appear to reverse the poor metabolizer phenotype associated with this genotype. Although our data suggest that the effect of rifampin on efavirenz clearance might differ depending on patient CYP2B6 genotype, the lack of an appropriate control group limits any firm conclusions. Consequently, a controlled 2-way crossover pharmacokinetic interaction study examining the effect of rifampin within each subject is currently underway to directly address this hypothesis.
| ACKNOWLEDGEMENTS |
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Dr Hartmut Derendorf acted as editor for this article.
Financial disclosure: This research was funded in part by a 2004 developmental grant from the Lifespan/Tufts/Brown Center for AIDS Research and NIH K23 developmental award (NIH K23 AI071760) to Dr Kwara. The project described was supported by grant P30AI042853 from the National Institute of Allergy and Infectious Diseases. Dr Greenblatt is supported by grants AG-17880 and AI-58784, and Dr Court is supported by grants GM-74369 and GM-61834 from the Department of Health and Human Services. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institute of Allergy and Infectious Diseases or the National Institute of Health. Dr Kwara has received research funding from Bristol-Myers Squibb and is a member of the speaker's bureau. The other authors declare no conflict of interest.
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