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Journal of Clinical Pharmacology, 2004; 44:854-860
© 2004 the American College of Clinical Pharmacology


PHARMACOGENETICS

Influence of Genetic Variants in UGT1A1 and UGT1A9 on the In Vivo Glucuronidation of SN-38

Luca Paoluzzi, MD, Arun S. Singh, BS, Douglas K. Price, PhD, Romano Danesi, MD, PhD, Ron H. J. Mathijssen, MD, PhD, Jaap Verweij, MD, PhD, William D. Figg, PharmD and Alex Sparreboom, PhD

From the Clinical Pharmacology Research Core, National Cancer Institute, Bethesda, Maryland (Dr. Paoluzzi, Dr. Figg, Dr. Sparreboom); Division of Medical Oncology, Regina Elena Cancer Institute, Rome, Italy (Dr. Paoluzzi); Howard Hughes Medical Institute, Bethesda, Maryland (Mr. Singh); Molecular Pharmacology Section, National Cancer Institute, Bethesda, Maryland (Mr. Singh, Dr. Price); Department of Oncology, University of Pisa, Pisa, Italy (Dr. Danesi); and Erasmus MC—Daniel den Hoed Cancer Center, Rotterdam, the Netherlands (Dr. Mathijssen, Dr. Verweij). Dr. Paoluzzi and Mr. Singh contributed equally to this work. Dr. Figg is a member of the American College of Clinical Pharmacology (FCP). Mr. Singh is a Howard Hughes Medical Institute-National Institutes of Health Research Scholar.

Address for reprints: William D. Figg, PharmD, Clinical Pharmacology Research Core, National Cancer Institute, Building 10, Room 5A01, MSC 1910, 9000 Rockville Pike, Bethesda, MD 20892.


    ABSTRACT
 TOP
 ABSTRACT
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
The uridine diphosphate glucuronosyltransferase (UGT) 1A1 and 1A9 isoforms are involved in the phase II biotransformation of the irinotecan metabolite, SN-38. Recently, several variants in the UGT1A1 and UGT1A9 genes have been described with altered functionality in vitro. The aim of this study was to evaluate the functional consequence of the UGT1A1(TA)7TAA (UGT1A1*28), UGT1A9 766G>A (D256N; UGT1A9*5), and UGT1A9 98T>C (M33T; UGT1A9*3) variants in Caucasian patients treated with irinotecan. Pharmacokinetic studies were performed after the first course of irinotecan in 47 males and 47 females. The mean (SD) area under the curves (AUCs) of irinotecan and SN-38 were 20,348 ± 6466 ng•h/mL and 629 ± 370 ng•h/mL, respectively, which is in line with earlier findings. For UGT1A9*5,novariant alleles were observed, whereas for UGT1A9*3, 1 patient with the variant allele was found (allele frequency, 0.633%). The distribution of the UGT1A1*28 variant showed 44 wild-type patients (Wt), 37 heterozygotes (Het), and 5 homozygotes (Var). The median AUC ratio of SN-38G to SN-38 was significantly reduced in carriers of the variant UGT1A1*28 allele (7.00 [Wt] vs. 6.26 [Het] vs. 2.51 [Var]; p = .022). It is concluded that UGT1A9 functional variants are rare in Caucasians and likely to be clinically insignificant in irinotecan regimens. Screening for the UGT1A1*28 polymorphism may identify patients with altered SN-38 pharmacokinetics.

Key Words: UGT1A1UGT1A9irinotecanpharmacokineticsgenetic variantsSN-38


The uridine diphosphate glucuronosyltransferase (UGT) family of enzymes is involved in the phase II transformation of various carcinogens, drugs, and endogenous substances such as bilirubin and steroid hormones. In human beings, there are currently 17 identified UGT transcripts, subdivided into three subfamilies: UGT1A, UGT2A, and UGT2B. The UGT1A subfamily, located on chromosome 2q37, contains nine members, which are formed by the alternative splicing of the various exon 1s (the substrate binding domain) to exons 2 through 5 (the UDP-glucuronic acid-binding domain), while the UGT2 subfamilies are encoded by different genes located on chromosome 4q13.1-4 These proteins are primarily membrane bound and are found subcellularly in the endoplasmic reticulum. Each member of the UGT family has its own specific tissue distribution, but the liver and gastrointestinal tract contain most of these enzymes.5,6 The UGT family's main task in the body is glucuronidation, which is both a clearance and detoxification mechanism; these enzymes have also been postulated to have evolutionarily important protective functions. Chemically, the glucuronidation of substances renders them more hydrophilic and lends them to easier elimination, while at the same time, the addition of the glucuronide moiety decreases the bioactivity of most substances.2

The UGT family is replete with polymorphisms, the functional significance of which is known for only a few. These genetic variants of the UGT enzymes engender some very clinically relevant problems. Gilbert's syndrome and Crigler-Najjar syndromes I and II, all nonhemolytic unconjugated hyperbilirubinemias, are due to mutations or a lack of UGT1A1 activity.1,4 Furthermore, a polymorphism named *3 in the UGT1A7 allele, which is important in the elimination of benzo(a)pyrene and other polycyclic aromatic hydro-carbons, has been linked to an increased incidence in otolaryngeal cancers in smokers, spontaneous colorectal carcinomas, and hepatocellular carcinomas.7-9 Moreover, these enzymes are involved in the metabolism of several important chemotherapy agents, including irinotecan, tamoxifen, and epirubicin.5

Irinotecan (CPT-11) is a particularly important drug because it is included in the first-line regimen for advanced metastatic colorectal cancer as well as regimens for lung cancer.10 It is a prodrug that is transformed to the highly active topoisomerase 1 inhibitor, SN-38, by carboxylesterase enzymes. However, its major dose-limiting side effect is diarrhea.11 Irinotecan's metabolism is particularly relevant in the context of the UGT family because the main route of elimination for SN-38 is through glucuronidation and biliary excretion. Furthermore, it is theorized that the glucuronidation of SN-38 is important for decreasing the toxicity of SN-38 to the intestinal mucosa, which leads to diarrhea.12,13

The UGT1A1, UGT1A7, and UGT1A9 isoforms are responsible for most of the glucuronidation of SN-38.14-16 The UGT1A1(TA)7TAA (UGT1A1*28) polymorphism17 has been correlated in small studies with an increased incidence of diarrhea and neutropenia; it has also been proposed to be of utility as a pretreatment test to predict irinotecan-associated toxicities.18,19 But other studies have pointed out that the correlation is not absolute; interindividual differences in levels of UGT1A isoforms, environmental effects on enzyme levels, and the contribution of other UGT isoforms to SN-38 glucuronidation have been postulated to contribute to the missing link.15,20 The UGT1A7 isoform and its variants were shown not to correlate with irinotecan-associated diarrhea or neutropenia.21 Recently, groups have begun to study the contribution of UGT1A9 polymorphisms to individual variability in SN-38 glucuronidation. While Vogel et al9 failed to find UGT1A9 polymorphisms in a group of German patients, Jinno et al22 found the novel UGT1A9 766G>A (D256N; UGT1A9*5) variant in 1 of 61 Japanese cancer patients being treated with irinotecan, and Villeneuve et al23 found 4.4% of a Caucasian population to have a previously undescribed UGT1A9 98T>C (M33T; UGT1A9*3) variant and 1 of 20 African American patients to have the UGT1A9*2 mutation. Only the UGT1A9*3 allele exhibited a diminished glucuronidating ability for SN-38. Here, we explored the allelic frequencies and functional consequence of the UGT1A1*28, UGT1A9*3,and UGT1A9*5 variants in a Caucasian population treated with irinotecan.


    METHODS
 TOP
 ABSTRACT
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Patients and Treatment
A group of 94 adult Caucasian patients (47 males and 47 females) with histologically confirmed diagnosis of a malignant solid tumor (e.g., gastrointestinal cancers), for which there was no effective standard regimen and irinotecan was a reasonable treatment option, were treated with irinotecan administered as a 90-minute intravenous infusion at a median dose of 600 mg. The patients had a median age of 54 years (range: 34-75 years) and good marrow reserve (i.e., absolute neutrophil count ≥ 2.0 x 109/L and platelet count ≥ 100.0 x 109/L). None of the patients received any other concurrent chemotherapy or other drugs, food supplements, and/or herbal preparations known to interfere with the pharmacokinetics of irinotecan. The clinical protocol, including blood sampling for the purpose of pharmacokinetic and pharmacogenetic analyses, was approved by the institutional review board, and all patients provided written informed consent.

Irinotecan Disposition
Pharmacokinetic studies were performed after the first course of irinotecan. Blood samples of about 5 mL each were collected at serial time points up to 500 hours after drug administration and were centrifuged to obtain plasma. Pharmacokinetic data obtained in a subset of 53 patients were described previously.24 Concentrations of irinotecan, SN-38, and SN-38 glucuronide (SN-38G) were determined using a validated method based on liquid chromatography with fluorescence detection, as described elsewhere.25 Previously developed population models were used to predict the pharmacokinetic parameters of irinotecan, SN-38, and SN-38G.26

The area under the plasma-concentration time curve (AUC) normalized to the recommended single-agent dose of 600 mg was simulated for irinotecan and its metabolites in all patients from time 0 to 100 hours after start of infusion. This analysis was performed using NONMEM version VI (S. L. Beal and L. B. Sheiner, San Francisco). Metabolic conversion ratios were calculated as the AUC ratio of SN-38 to irinotecan and the AUC ratio of SN-38G to SN-38. Previously, it was shown that the AUC of irinotecan, SN-38, and SN-38G is dose proportional over a large dose range in the tested 3-week regimen with irinotecan administered as a 90-minute intravenous infusion, indicating a linear pharmacokinetic behavior.15,20 Therefore, values for all AUC ratios were compared directly without any correction for differences in drug dose administered between patients. Previous investigations have shown that both age and sex are not significant covariates on irinotecan clearance or exposure to the metabolites.26

Genotyping Techniques
Deoxyribonucleic acid (DNA) was extracted from the serum using a QiaBlood extraction kit (Qiagen, Valencia, CA) and stored at 4°C.27 The UGT1A1*28 polymorphism was analyzed by direct sequencing as described previously.28 For UGT1A9, primers were selected that overlapped the portion of the UGT1A9 gene containing the UGT1A9*5 and UGT1A9*3 variants (Table I).22,23 The DNA products were amplified with primers obtained from Invitrogen (Carlsbad, CA) using 1.25-U Platinum Taq DNA polymerase. Samples were subject to an initial 40-cycle reaction using 40-pmol primers with the following temperature cycle: 5 minutes at 94°C, 30 seconds at 94°C, 30 seconds at 62°C, 30 seconds at 72°C, and 7 minutes at 72°C. The samples were checked via 4% agarose gel electrophoresis for the presence of products. Those samples that did not amplify were subjected to a nested polymerase chain reaction (PCR) amplification. The nested PCR reaction consisted of a primary 20-cycle round of amplification using 20 pmol of the forward (F)1 and reverse (R)1 primers with the same conditions as above. The second round of amplification was carried out using 40 pmol of the F2 and R2 primers for 40 cycles (see settings above). All reactions were verified for product using 4% agarose gel electrophoresis.


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Table I Primers for UGT1A9 Amplification and Sequencing

 

All samples were cleaned with the Microcon YM-100 DNA purification kit (Millipore, Billerica, MA) in preparation for PCR for sequencing. Sequencing PCR was done with 3.2 pmol of F3 or R3 primers using dRhodamine terminator cycle sequencing reaction reagents (ABI Prism 403042) under the following cycle sequence: 5 minutes at 94°C, 10 seconds at 96°C, 5 seconds at 50°C, and 4 minutes at 60°C. The PCR products were then sequenced on an ABI Prism 310 Genetic Analyzer as per the manufacturer's instructions.

Pharmacodynamic Evaluation
Complete blood cell counts and chemistry were obtained for each patient prior to study entry, prior to each chemotherapy course, and was repeated once weekly during the patients' outpatient visits. In case of severe hematologic toxicity, blood cell counts were measured daily or as clinically indicated. Diarrhea was scored using the National Cancer Institute common toxicity criteria (NCI-CTC) version 2.0 (accessed May 4, 2004, at http://ctep.info.nih.gov/reporting/ctc.html).

Statistical Analysis
Pharmacokinetic data were presented as mean values ± SD unless otherwise indicated. Correlations between SN-38G or SN-38 pharmacokinetic parameters and the variant genotypes were assessed by a nonparametric Kruskal-Wallis test followed by a comparison of all means with a Tukey-Kramer multiple-comparison test (NCSS v2001; J. Hintze, Number Cruncher Statistical Systems, Kaysville, UT). Also, a separate nonparametric Mann-Whitney U test was used to compare the UGT1A1*28 homozygotes with wild types plus heterozygotes. The a priori cutoff for statistical significance was set at p < 0.05.


    RESULTS
 TOP
 ABSTRACT
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Genotypic and Allelic Frequencies
For UGT1A1*28, 86 patients had nonambiguous electropherograms; 44 patients (51.2%) were wild-type (TA6/TA6), 37 (43.0%) were heterozygous (TA6/TA7), and 5 (5.80%) were homozygous variant (TA7/TA7) (Table II). This corresponds to an allele frequency of 72.6% for the wild-type allele (p) and 27.3% for the variant (q). Of the 94 patients tested for the UGT1A9*5 variant, all showed amplification products, with 82 of the patients having nonambiguous sequencing electropherograms, and each of these had a wild-type sequence. Of the 94 subjects tested for the UGT1A9*3 variant, 79 showed amplification products, with 78 patients having nonambiguous sequencing electropherograms. With the exception of 1 patient carrying the heterozygote sequence for UGT1A9*3, only wild types were observed (allele frequency, 0.633%).


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Table II Genotype and Allele Frequencies for the Studied Variants

 

Genotypes-Pharmacokinetics Correlations
The mean AUCs for irinotecan, SN-38, and SN-38G, as well as the metabolic ratios, were consistent with previously reported estimates (Table III).26 The kinetic values were derived from a population kinetic approach, with AUC values being predicted at a dose of 600 mg/patient, using an assumption of linear kinetics.20 The median AUC ratio of SN-38G to SN-38 was significantly reduced in patients with the variant UGT1A*28 allele: 7.00 for wild-type patients versus 6.26 for heterozygous versus 2.51 for homozygous (p = 0.022) (Table IV and Figure 1). A separate nonparametric Mann-Whitney U test showed that median values for the AUC ratio of SN-38G to SN-38 in patients homozygous for UGT1A1*28 were significantly different from that observed in wild-type and heterozygous patients combined (p = 0.012). As a result, circulating concentrations of unconjugated SN-38 were substantially increased in patients carrying the homozygous variant sequence (Table IV). The other pharmacokinetic parameters tested were not significantly affected by the UGT1A1*28 genotype.


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Table III Summary of Pharmacokinetic Parameters

 

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Table IV Pharmacokinetic Parameters as a Function of UGT1A1*28 Genotype

 


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Figure 1. Comparison of the AUC ratio of SN-38G to SN-38 among those patients who are wild type (TA6/TA6), heterozygous (TA6/TA7), or homozygous variant (TA7/TA7) for UGT1A1*28. Each point represents an individual patient. The horizontal lines indicate mean values. The x-axis positions were artificially manipulated to allow better visibility.

 

The UGT1A9*3 genotype was found in only 1 patient, and it did not significantly affect the pharmacokinetics of irinotecan in this patient. This patient's SN-38G to SN-38 AUC ratio was 11.4, which is within 1 standard deviation of the mean value (7.49 ± 5.50) of this ratio in the entire patient population. Furthermore, this patient did not experience diarrhea or neutropenia and was wild type with respect to UGT1A1*28. Diarrhea graded 2, 3, and 4 on the NCI-CTC scale was observed in 18%, 11%, and 2% of patients, respectively, and was not significantly associated with the UGT1A1*28 genotype (p = 0.74).


    DISCUSSION
 TOP
 ABSTRACT
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Irinotecan is an antitumor prodrug of the topoisomerase I inhibitor SN-38 with a complex metabolism that involves several phase I and II enzymes. Glucuronidation is the major route of biotransformation responsible for the elimination and inactivation of SN-38.2 UGT1A1 was previously suggested to be the main human UGT isoform involved in the formation of SN-38G.16,18,19,29,30 The metabolic clearance of SN-38 in patients with cancer is of considerable clinical significance since increased concentrations of SN-38 are correlated with the incidence and severity of diarrhea, irinotecan's main dose-limiting side effect, as well as with neutropenia.29,31

In a retrospective case control study of 26 Japanese patients who experienced greater toxicity following irinotecan treatment, multivariate analysis suggested that a heterozygous or homozygous genotype for UGT1*28 would be a significant risk factor for severe toxicity by this drug.18 Shortly thereafter, a prospective clinical pharmacogenetic study of 20 patients being treated with irinotecan for solid tumors observed that 1 of 7 heterozygotes experienced grade 4 diarrhea, 1 of 4 of the homozygote variant demonstrated grade 3 neutropenia, and another homozygote demonstrated both grade 3 diarrhea and grade 4 neutropenia.19 The findings from these studies have been propagated as a rationale for performing pretreatment genetic testing on patients receiving irinotecan, despite the small sample sizes tested. One aim of the current work was to analyze the frequency of the UGT1A1*28 polymorphism in a larger set of Caucasian patients and its relevance to SN-38 glucuronidation.

The current UGT1*28 genotype analysis revealed the presence of three different groups of patients carrying the wild-type (n = 44), heterozygous (n = 37), or homozygous (n = 5) variant sequence. The wild-type and the heterozygous variant populations exhibited similar median glucuronidation efficiencies: 7.00 and 6.26, respectively. However, the homozygous variants exhibited only ~35% of the efficiency of the other two groups, which was significant at p = 0.012. The allele frequencies of the patients in our study were 0.727 for wild type and 0.273 for the variant, comparable with the allele frequencies observed by Iyer et al19 of 0.625 and 0.375, respectively. The frequency of UGT1A*28 homozygotes has been reported to be about 0.5% to 23% in different populations and to be much lower in the Asians compared to Caucasians and Africans.5,28,32

A previous study showed a slightly impaired SN-38 glucuronidation in 2 homozygous variant patients with the UGT1A*28 genotype without a statistically significant difference (p = 0.22).24 These results could be due to a low allele frequency of the variant allele in that Caucasian population. That study did note, however, that there was a downward trend in the AUC ratio for the homozygous variants versus the wild-type and heterozygous populations.

Recent data have suggested a major role of UGT1A9 in addition to UGT1A1 in the biotransformation of SN-38. In vitro studies identified two novel, functional nonsynonymous single-nucleotide polymorphisms in UGT1A9 exon 1.22,23 Jinno et al22 found 1 of 61 Japanese cancer patients with the 766G>A variant, which results in the amino acid substitution D256N (UGT1A9*5), and Villeneuve et al23 found 4.4% of a population of 201 French Canadians to be heterozygous for the variant UGT1A9*3, which results in the amino acid substitution M33T. These two variants showed less than 5% of SN-38 glucuronidation efficiency in comparison with their wild-type proteins.

In our study, we did not find any cases of the UGT1A9*5 variant in a group of 82 patients, although for UGT1A9*3, we observed 1 of 78 patients with the heterozygous 98T>C mutation. The glucuronidation ratio of the patients in this study ranged from 1.70 to 37.5. The 1 patient with the UGT1A9*3 variant allele did not exhibit decreased glucuronidation as would be predicted according to the in vitro data.23 In fact, this patient's SN-38G to SN-38 AUC ratio was 11.4, which was higher than the mean value of 7.49. This patient also turned out to be wild type for UGT1A1*28. Surprisingly, the patient who showed the lowest value of SN-38 glucuronidation (i.e., 1.70) revealed a wild-type genotype for the three UGT1A variants evaluated in this study. These results point to the importance of additional factors involved in SN-38 inactivation and toxicity. For example, two recent studies have indicated that variations in genes encoding MDR1 P-glycoprotein (ABCB1) may increase exposure to irinotecan and SN-38, as well as influence renal excretion of the drug.24,33 In addition, the complexity of irinotecan metabolism indicates the likelihood of additional factors being responsible for its side effects, including environmental and physiologic factors.20

In conclusion, the UGT1A1*28 polymorphism seems to be only one of few identified causes of altered SN-38 pharmacokinetics and possibly of irinotecan-induced toxicities. In addition, the present data indicate that in a Caucasian population, the UGT1A9*5 and UGT1A9*3 variants are infrequent and of unlikely significance in relation to irinotecan metabolism and toxicity. It is concluded that screening for the UGT1A*28 polymorphism may identify patients with altered SN-38 pharmacokinetics and may aid in individualizing chemotherapeutic treatment with irinotecan. It is possible that a study comparing the haplotypes of the UGT1A1 and UGT1A9 genes with irinotecan's pharmacodynamics and pharmacokinetics may provide more precise information.34 Further studies focusing on analysis of additional functional variants in genes involved in irinotecan elimination are warranted.


    FOOTNOTES
 
The authors report no relationships that are conflicts of interest in the carrying out of these experiments or in the presentation of the data in this article. This project was funded, in part, by the intramural program of the National Cancer Institute (Bethesda, MD) and the Italian Foundation for Cancer Research (Milano, Italy).

DOI: 10.1177/0091270004267159

Submitted for publication March 17, 2004; Revised version accepted May 10, 2004.


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 ABSTRACT
 METHODS
 RESULTS
 DISCUSSION
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